Boutique hotels in Thousand Islands

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Top-rated boutique hotels in Thousand Islands

Guests agree: These boutique hotels are highly rated for location, cleanliness and more.

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Guest favourite

A spacious sleeping area is enhanced by a wooden ceiling, creating an inviting ambiance. Large glass doors open to a balcony, allowing natural light to fill the room. A bedside table holds a potted plant, and a soft area rug complements the flooring.

Hotel room in Clayton

4.94 out of 5 average rating, 108 reviews

Island Bay Waterfront Captains Suite

Our one of a kind location is nested right on the edge of the Village of historic Clayton, with our upstairs studio style suite overlooking our waterfront lawn and dock area, unique with great views and centrally located right in the heart of the 1000 islands area. New from top to bottom with all amenities and private balcony with dockage right in front available, a boaters dream! King size bedroom with Full kitchenette with all the essentials with full 2 couch living area with modern amenities!

The cozy bedroom features a queen-sized bed with a quilted gray coverlet. A wooden cabinet and coffee maker are positioned nearby. The room is illuminated by two table lamps on either side. A large area rug with floral patterns covers the dark wooden floor.

Hotel room in Gananoque

4.92 out of 5 average rating, 38 reviews

The Frederick Suite – Stonewater Manor B&B

Welcome to the Frederick Suite at the Stonewater Manor B&B. We are located 2 minutes from the Gananoque Boat Lines Thousand Islands Tours dock, the Arthur Child and Antique Boat Museums, the beach and Joel Stone Park and the 1000 Islands Playhouse. Our Frederick Suite is a cozy room that has good views of the Gananoque harbour and St. Lawrence River. This season, as a more Covid friendly option, we are offering continental breakfasts served to your room, included in the rate for your stay.

Guest favourite

A modern hotel suite features a spacious bed flanked by soft lighting. A 75-inch television is mounted on the wall across from the bed, with a sleek entertainment console below. A wall-mounted electric fireplace adds warmth, and a window offers natural light with a view.

Hotel room in Prince Edward

4.94 out of 5 average rating, 16 reviews

Cribs on Main-Picton Hotel - Suite 7

Suite 7 boasts 447 sq ft featuring a king bed, radiant floor heating, ambient fireplace, walk-in shower with a window open to the bedroom (with a privacy blind), a separate water closet, work station, a 75" smart tv and a mini-bar. Room 7 is "barrier friendly," offering a lift from the ground to the second floor and accessibility features throughout. These include wider-than-standard doors, a curbless shower, a chair-height vanity, a slide-in shower, and an available shower stool.

Top Guest favourite

The modern kitchen showcases light blue cabinetry with gold hardware and a white countertop. A stylish sink is placed beneath a decorative light fixture, accompanied by a countertop blender, kettle, and coffee maker. Above, a piece of wall art adds a touch of color.

Hotel room in Prince Edward

4.96 out of 5 average rating, 102 reviews

Beautifully designed suite on Wellington Main ST.

This stylish studio is close to all the must-see destinations in PEC! Steps away from the best restaurants and shopping in Wellington, just a short walk to the beach or Millennium trail. This beautiful suite comes equipped with a full kitchen and laundry, spacious private deck overlooking Main Street and is right above the Creekside Cafe. Our small boutique hotel has two guests suites so please inquire if you require more space. STA licence # ST-2021-0229

Top Guest favourite

A guest room features two spacious beds, dressed in white linens, against a vivid pink floral wallpaper. Framed portraits adorn the walls, adding a touch of elegance. A side table with a soft lamp is positioned between the beds, creating a cozy ambiance.

Hotel room in Prince Edward

4.98 out of 5 average rating, 52 reviews

Boutique Suites in PEC with Hot Tub

Welcome to Fancie's PEC! - Family-run boutique accommodation with 5 separate guest suites. - Direct access to The Bay of Quinte offering scenic waterfront views. - Enjoy a dedicated guest kitchen, fast Wi-Fi, and a dining room. - Complimentary amenities include linens, towels, and coffee/tea. - Outdoor amenities available for all guests, including a 5-person hot tub! - Summer parking pass for Sandbanks Provincial Park, known for stunning beaches.

Superhost

A spacious guest room is presented with vibrant red wallpaper and traditional furnishings. A king size bed with decorative linens is framed by tall posts. An ornate fireplace, accompanied by a red armchair, adds charm. A vintage rug covers the wood floor, contributing to the room's historic ambiance.

Hotel room in Gananoque

4.84 out of 5 average rating, 43 reviews

The King's Room - Chrysler House Heritage Inn

Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The King's Room features a king size bed and private bathroom with jet tub and shower *located down the hall from the bedroom*. It overlooks the Gananoque river and bridge.

Guest favourite

A spacious bedroom features a classic wooden sleigh bed covered with a soft beige duvet. Natural light streams through large windows adorned with floral curtains, highlighting a decorative dresser with floral arrangements. A cozy seating area includes an antique chair on a patterned rug.

Hotel room in Gananoque

4.89 out of 5 average rating, 46 reviews

The Garden Room - Chrysler House Heritage Inn

Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Garden Room is light and spacious and features a luxurious king size bed, ensuite bathroom with jet tub and walk-in shower, and private entrance onto the backyard deck.

Superhost

A well-maintained garden showcases a variety of colorful flowers, including orange and yellow blooms. A patio area with seating is visible in front of the mansion's entrance, surrounded by lush greenery and a welcoming stone pathway leading to the main door.

Hotel room in Gananoque

4.77 out of 5 average rating, 48 reviews

The Peninsula Room - Chrysler House Heritage Inn

Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Peninsula Room is a light and cozy room that features a twin bed and an ensuite half bathroom. A private shower is available outside of the bedroom on the first floor.

Guest favourite

A charming bedroom features a double bed with a classic wooden headboard, accompanied by an elegant green chair. Decorated with floral wallpaper and rich tones, it showcases a small bedside table and a vintage area rug, providing a warm and inviting space.

Hotel room in Gananoque

4.88 out of 5 average rating, 75 reviews

The Heritage Room - Chrysler House Heritage Inn

Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Heritage Room features a double bed and twin bed, and a three piece ensuite bathroom with walk-in shower. It is full of Victorian charm and overlooks the back garden.

Hotel room in Kingston

New place to stay

#3 Private Studio Retreat w Kitchenette & Smart TV

Comfortable and private ground-floor studio perfect for couples, solo travelers, or business stays in Kingston. This unit features a Double bed, ensuite bathroom, Smart TV, fast WiFi, workspace, and parking directly outside your door. Enjoy a convenient kitchenette complete with microwave, fridge, kettle, and French press coffee maker for an easy and relaxing stay.

Hotel room in Kingston

New place to stay

#10 Cozy & Clean Studio | Queen’s & DT Nearby

Simple, private, and comfortable studio ideal for solo travelers visiting Kingston. This ground-floor unit features a Twin bed, ensuite bathroom, Smart TV, workspace, high-speed WiFi, and parking directly outside your door. Enjoy a practical kitchenette setup with microwave, fridge, kettle, and French press coffee maker for easy everyday convenience.

Superhost

Hotel room in Watertown

The Pine Street Inn - Room 7

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.