Boutique hotels in Thousand Islands

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Top-rated boutique hotels in Thousand Islands

Guests agree: These boutique hotels are highly rated for location, cleanliness and more.

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Top Guest favourite

A spacious sleeping area is enhanced by a wooden ceiling, creating an inviting ambiance. Large glass doors open to a balcony, allowing natural light to fill the room. A bedside table holds a potted plant, and a soft area rug complements the flooring.

Hotel room in Clayton

4.94 out of 5 average rating, 123 reviews

Island Bay Waterfront Captains Suite

Our one of a kind location is nested right on the edge of the Village of historic Clayton, with our upstairs studio style suite overlooking our waterfront lawn and dock area, unique with great views and centrally located right in the heart of the 1000 islands area. New from top to bottom with all amenities and private balcony with dockage right in front available, a boaters dream! King size bedroom with Full kitchenette with all the essentials with full 2 couch living area with modern amenities!

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Hotel room in Wolfe Island

4.74 out of 5 average rating, 27 reviews

Room 3 - Waterview King Room

Room 3 includes a king-sized bed, a private ensuite bathroom, a mini-fridge, a coffee maker, and a microwave. Guests can enjoy views of the St. Lawrence River and downtown Kingston, 5 km across the water. At night, the city lights of Kingston create a beautiful illuminated scene. Additionally, guests get free parking and complimentary Wi-Fi. Please note that none of our hotel rooms have a TV; however, guests can stream content on their devices.

Guest favourite

A spacious bedroom features a classic wooden sleigh bed covered with a soft beige duvet. Natural light streams through large windows adorned with floral curtains, highlighting a decorative dresser with floral arrangements. A cozy seating area includes an antique chair on a patterned rug.

Hotel room in Gananoque

4.89 out of 5 average rating, 54 reviews

The Garden Room - Chrysler House Heritage Inn

Chrysler House is a unique 6800 sq ft Georgian-Victorian style mansion built in 1826. It is located in the historical heart of Gananoque and the beautiful 1000 Islands; just minutes away from the waterfront, marina, boat line, beach, downtown shopping and restaurants. The Garden Room is light and spacious and features a luxurious king size bed, ensuite bathroom with jet tub and walk-in shower, and private entrance onto the backyard deck.

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A comfortable sleeping area is presented with a spacious bed dressed in soft white linens. Two light-colored nightstands are positioned on either side, each featuring a lamp. A serene painting of sailboats is hung above the bed, offering a calming visual element.

Hotel room in Wolfe Island

4.57 out of 5 average rating, 21 reviews

Room 9 - Economy Room

Room 9 is a small yet economical and comfortable option. While it offers a roof view, guests are welcome to enjoy the shared spaces within our hotel. This basic room is ideal for weary travelers or budget-conscious guests. It includes a private ensuite bathroom and a mini fridge. Guests get free parking and complimentary Wi-Fi. Please note: None of our hotel rooms have a TV, but guests are welcome to stream content on their devices.

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A newly renovated room features a queen bed with white linens and four plush pillows. A wooden desk and a mirror are positioned beside the bed. A red accent chair adds a pop of color, while soft natural light illuminates the space through a nearby window.

Hotel room in Wolfe Island

4.73 out of 5 average rating, 15 reviews

Room 5 - Standard Queen Room

This newly renovated side-view room features an accent wall and laminate flooring. It includes a queen bed and a private ensuite bathroom. For your convenience, a coffee maker and mini fridge are provided. Guests also enjoy free parking and complimentary Wi-Fi. Please note: None of our hotel rooms are equipped with a TV, but guests are welcome to stream content on their own devices.

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A side-view room features a queen bed with white linens and decorative pillows. Two bedside tables with lamps are positioned on either side. A minimalist black chair is placed beside the bed. Natural light enters through a nearby window, illuminating the laminate flooring.

Hotel room in Wolfe Island

4.54 out of 5 average rating, 13 reviews

Room 7 - Standard Queen Room

This newly renovated side-view room features an accent wall and laminate flooring. It includes a queen bed and a private ensuite bathroom. For your convenience, a mini fridge is provided. Guests also enjoy free parking and complimentary Wi-Fi. Please note: None of our hotel rooms are equipped with a TV, but guests are welcome to stream content on their own devices.

Guest favourite

A well-lit hallway leads into the suite, showcasing smooth wooden flooring. To the left, a door opens to a cozy sleeping area, and a small work station is positioned against the wall, providing functional space. A large window allows natural light to flood the room.

Hotel room in Prince Edward

4.96 out of 5 average rating, 56 reviews

Cribs on Main-Picton Hotel - Suite 2

Suite 2 boasts 356 sq ft and features a king bed, heated floors, and a walk-in shower with a window to the bedroom for added light (privacy blind included). Enjoy the convenience of a separate water closet, work station, 75" flatscreen TV, and a mini-bar. With a view of Main Street, this room blends fresh, modern styling with cozy County comfort. Relax in luxury

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Hotel room in Watertown

The Pine Street Inn - Room 1

The Pine Street Inn — Cozy, Stylish, and Affordable Welcome to The Pine Street Inn, your home away from home where comfort meets convenience in a warm, affordable setting. Perfect for traveling professionals, military personnel, and long-term guests, our inn offers a cozy place to rest and recharge after a busy day.