Boutique hotels in San Diego County

Find and book unique boutique hotels on Airbnb

Top-rated boutique hotels in San Diego County

Guests agree: These boutique hotels are highly rated for location, cleanliness and more.

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Guest favourite
A bright sleeping area features a spacious bed covered in crisp white linens, complemented by a plush accent pillow. Light wood furniture is arranged around the room, including a desk with a small television and a decorative plant, while natural light fills the space through a high ceiling.
Hotel room in Oceanside
4.93 out of 5 average rating, 226 reviews

Standard King @ The Green Room Hotel

As featured in Travel+Leisure, Condé Nast & LATimes, The Green Room Hotel is a thoughtfully designed boutique stay in hip & vibrant South O just steps from the beach, top restaurants & Carlsbad Village. Unlike typical rentals, there’s an inviting warmth here, from its tranquil & well-appointed shared patio to hosts regularly on site offering personal recommendations. Secure parking, cedar hot tub, surf, bike & beach gear included! Bar, restaurant, & grocer next door. No service or cleaning fees.

Hotel room in San Diego
4.66 out of 5 average rating, 93 reviews

Neon Elm Hotel - Heart of San Diego King Suite TV

The Neon Elm Hotel professionally managed by NOVIQ. Escape to our San Diego studio, ideally situated for exploring the city. This inviting space features a king bed, private bathroom, and kitchenette. Enjoy amenities like a coffee maker and smart TV. Located near Balboa Park and the Gaslamp Quarter, you'll have easy access to San Diego's top attractions, including Petco Park and the San Diego Zoo. Enjoy a comfortable and convenient stay in a prime location, perfect for your San Diego adventure.

Guest favourite
A cozy bedroom features a spacious bed with light bedding, a stone fireplace, and a wooden armoire. A pair of floral armchairs sits beside the fireplace. Natural light enters through sliding doors that lead to a serene outdoor area, enhancing the peaceful ambiance.
Hotel room in Julian
4.86 out of 5 average rating, 29 reviews

Winter Room @ Eaglenest Inn w/ Pool & Seasonal SPA

Eaglenest Inn is a charming retreat offering three cozy guest rooms and a spacious two-bedroom suite, each equipped with a smart TV and a private bathroom for ultimate comfort. Guests can enjoy breathtaking views of the surrounding mountains or the serene garden. The inn offers the flexibility to book multiple rooms or the entire house, making it an ideal venue for get-togethers, special events, and celebrations such as rehearsal dinners, birthday parties, service anniversaries, and honeymoons.

Superhost
A spacious bedroom is highlighted by large windows allowing natural light to fill the area. A low-profile bed with soft linens is accompanied by an elegantly designed dresser and a vintage-style lamp. Two classic chairs offer a cozy seating arrangement in the corner.
Hotel room in San Diego
4.89 out of 5 average rating, 61 reviews

Hotel Narcissus - Room 6

Hotel Narcissus is a brand new 6-Room Boutique Hotel in the Logan Heights neighborhood of San Diego and features a Mexican Fusion Restaurant and Speakeasy Cocktail Bar called Alchemy. Logan Heights is one of the most beloved urban neighborhoods in San Diego due to its eclectic art scene and close proximity to Downtown. Hotel Narcissus is located at the base of the Coronado Bridge, less than 1-Mile Southeast of Petco Park. It is a 5-10 minute bike ride and a 20-25 minute walk to Downtown.

Guest favourite
Hotel room in Coronado
5 out of 5 average rating, 31 reviews

Hotel Marisol Coronado - Junior Suite

With just fifteen rooms, this intimate setting is a perfect couples retreat. The hotel even has a private courtyard where you can relax and surrender to the coastal breeze. Guests rave about our ideal location, tucked away on a quiet street, but walking distance to everything Coronado - beach, shops, restaurants, and entertainment. Jumpstart your getaway with a glass of complimentary champagne upon arrival. Ask our staff about local dining spots. Take a sunset stroll along the beach.

Hotel room in San Diego
4.94 out of 5 average rating, 18 reviews

Party in Gaslamp! Chic 2br, Sleeps 6, Best Area!

Stay in the heart of all the action and excitement. You're directly above the hottest nightclubs and restaurants (which can be noisy but we do provide earplugs ;) ) in the city in San Diego’s historic Gaslamp District in this updated 2-bedroom flat designed for comfort and convenience. Ideal for up to 6 guests with a king bed, queen bed, and queen sofa bed. Enjoy fast WiFi, a 48″ Smart TV, AC, a stainless kitchen, hardwood floors, secure access, and walkable access to Gaslamp Quarter.

Guest favourite
A spacious guest room is furnished with two large beds, each adorned with crisp white linens and soft green accent pillows. Natural light enters through a window, illuminating the room's neutral walls and wooden flooring. A desk and television are also visible, providing functional amenities.
Hotel room in San Diego
4.92 out of 5 average rating, 50 reviews

Old Town Hotel Room - 2 beds - Breakfast Included

We are a Hotel centrally located in Beautiful Old Town! Our space is a comfortable, clean, and centrally located gem, perfect for travelers seeking convenience and value. While our accommodations are basic, we pride ourselves on providing a spotlessly clean and cozy environment where you can unwind. What truly sets us apart is our incredible team; our staff goes above and beyond to make every guest feel right at home, ensuring your stay is as welcoming as it is memorable.

Guest favourite
A refreshing swimming pool is set against a clear blue sky, surrounded by lounge chairs in a vibrant red hue. A shaded area is provided by a large umbrella, while palm trees and desert landscaping create a tranquil outdoor setting.
Hotel room in Borrego Springs
4.85 out of 5 average rating, 47 reviews

Borrego Springs Motel; New Level 2 EV Charger!

Cute 8 room motel with big pool and walking distance to restaurants. A true desert experience awaits! We have a big pool that you may have all to yourself. Our rooms have new mini split air conditioners which will keep you comfortable at any temperature. If you seek peace and quiet try us out. Swim, get a tan, read a book, relax, view the stars, marvel at the natural desert surroundings! If our room listed here is booked, call us directly as we have other rooms available.

Superhost
A cottage room is presented with a Queen bed featuring layered linens and decorative pillows. A gas fireplace is situated between the bed and a spacious bathroom area. Natural light enters through multiple windows, highlighting the warm wood accents and country decor.
Hotel room in Julian
4.7 out of 5 average rating, 20 reviews

Orchard View 2 in Boutique Hotel

Experience the tranquil privacy of our 12 deluxe cottage rooms, each distinctively decorated to create a charming and intimate ambiance. Relax on your own porch, patio, or deck and savor Julian’s peaceful outdoors. The Orchard View 2 cottage room features a Queen bed and a whirlpool bathtub, adding an extra touch to your accommodations. All cottage rooms are equipped with in-room refrigerators, gas fireplaces, coffee makers, free WiFi.

Guest favourite
Hotel room in San Diego
4.88 out of 5 average rating, 43 reviews

Artifact Inn - Stay in Charming APT Prime location

Explore all of San Diego’s beautiful downtown from this gorgeously restored historic hotel. Walk to everything … Gaslamp Quarter, Petco Park, Convention Center, world-class restaurants and lounges. … King Bed, with Queen Sofa Bed … Keyless entry … 42" Samsung Smart TV - Direct TV is included … Efficiency Kitchen / Kitchenette … Air conditioning … High ceilings, ceiling fan … Fast free WIFI … Professionally cleaned & managed

Guest favourite
Hotel room in Julian
4.93 out of 5 average rating, 241 reviews

Carriage House suite #2

The mountains are calling.... Oak Hill Inn offers 3 charming rooms each with private entrance and bathroom. The perfect location with a short 5 min. walk to the heart of down town. Our Inn boasts rustic charm with modern comforts. We're family owned and operated for over 30 year and take pride in making our guest feel welcome!

A spacious sleeping area features a king bed with crisp white linens and a navy blue throw at the foot. A large window frames a view of the harbor and surrounding area. Two bedside lamps sit on modern nightstands beside the bed.
Hotel room in San Diego
4.7 out of 5 average rating, 23 reviews

Standard King Harbor View - Sea Harbor Hotel

Standard King Harbor View - is perfectly catered for a nightly retreat or long term stay by the shore. The newly renovated room features one king bed, harbor views, modern nautical aesthetics and premium furnishings for a memorable experience on the San Diego Marina.

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