Boutique hotels in San Diego County

Find and book unique boutique hotels on Airbnb

Top-rated boutique hotels in San Diego County

Guests agree: These boutique hotels are highly rated for location, cleanliness and more.

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Superhost
Hotel room in Oceanside
4.93 out of 5 average rating, 154 reviews

Two Bedroom Signature Suite @ The Green Room Hotel

As featured in Travel+Leisure, Condé Nast & LATimes, The Green Room Hotel is a thoughtfully designed boutique stay in hip & vibrant South O just blocks from the beach, top restaurants, & Carlsbad Village. Unlike typical rentals, there’s an inviting warmth here, from its tranquil & well-appointed shared patio to hosts regularly on site offering personal recommendations. Secure parking, cedar hot tub, surf & beach gear included. Bar, restaurant, & grocer next door. And no service or cleaning fees!

Guest favourite
Hotel room in Julian
4.88 out of 5 average rating, 33 reviews

Autumn Room @ Eaglenest Inn w/Pool & Seasonal SPA

Eaglenest Inn is a charming retreat offering three cozy guest rooms and a spacious two-bedroom suite, each equipped with a smart TV and a private bathroom for ultimate comfort. Guests can enjoy breathtaking views of the surrounding mountains or the serene garden. The inn offers the flexibility to book multiple rooms or the entire house, making it an ideal venue for get-togethers, special events, and celebrations such as rehearsal dinners, birthday parties, service anniversaries, and honeymoons.

Superhost
A cottage room is presented with a Queen bed featuring layered linens and decorative pillows. A gas fireplace is situated between the bed and a spacious bathroom area. Natural light enters through multiple windows, highlighting the warm wood accents and country decor.
Hotel room in Julian
4.7 out of 5 average rating, 20 reviews

Annie Elizabeth in Boutique Hotel

Experience the tranquil privacy of our 12 deluxe cottage rooms, each distinctively decorated to create a charming and intimate ambiance. Relax on your own porch, patio, or deck and savor Julian’s peaceful outdoors. The Annie Elizabeth cottage room features a Queen bed and a whirlpool bathtub, adding an extra touch to your accommodations. All cottage rooms are equipped with in-room refrigerators, gas fireplaces, coffee makers, free WiFi, and complimentary breakfast to ensure a comfortable stay.

Guest favourite
A spacious bedroom is highlighted by large windows allowing natural light to fill the area. A low-profile bed with soft linens is accompanied by an elegantly designed dresser and a vintage-style lamp. Two classic chairs offer a cozy seating arrangement in the corner.
Hotel room in San Diego
4.93 out of 5 average rating, 45 reviews

Hotel Narcissus - Room 6

Hotel Narcissus is a brand new 6-Room Boutique Hotel in the Logan Heights neighborhood of San Diego and features a Mexican Fusion Restaurant and Speakeasy Cocktail Bar called Alchemy. Logan Heights is one of the most beloved urban neighborhoods in San Diego due to its eclectic art scene and close proximity to Downtown. Hotel Narcissus is located at the base of the Coronado Bridge, less than 1-Mile Southeast of Petco Park. It is a 5-10 minute bike ride and a 20-25 minute walk to Downtown.

Guest favourite
A spacious room features a king bed adorned with soft, Italian linens and a plush throw. An accent wall in a calming blue contrasts with the bright white bedding. A doorway leads to the bathroom, visible in the background, completing the serene atmosphere.
Hotel room in Coronado
4.94 out of 5 average rating, 53 reviews

Hotel Marisol Coronado - King Room

With just fifteen rooms, this intimate setting is a perfect couples retreat. The hotel even has a private courtyard where you can relax and surrender to the coastal breeze. Guests rave about our ideal location, tucked away on a quiet street, but walking distance to everything Coronado - beach, shops, restaurants, and entertainment. Jumpstart your getaway with a glass of complimentary champagne upon arrival. Ask our staff about local dining spots. Take a sunset stroll along the beach.

Guest favourite
A refreshing swimming pool is set against a clear blue sky, surrounded by lounge chairs in a vibrant red hue. A shaded area is provided by a large umbrella, while palm trees and desert landscaping create a tranquil outdoor setting.
Hotel room in Borrego Springs
4.84 out of 5 average rating, 45 reviews

Borrego Springs Motel; New Level 2 EV Charger!

Cute 8 room motel with big pool and walking distance to restaurants. A true desert experience awaits! We have a big pool that you may have all to yourself. Our rooms have new mini split air conditioners which will keep you comfortable at any temperature. If you seek peace and quiet try us out. Swim, get a tan, read a book, relax, view the stars, marvel at the natural desert surroundings! If our room listed here is booked, call us directly as we have other rooms available.

Guest favourite
The illuminated Gaslamp Quarter entrance arch is captured at twilight. Streams of colorful light from passing vehicles create a dynamic scene. The surrounding buildings exhibit a mix of classic and contemporary architecture, contributing to the vibrant energy of this iconic San Diego neighborhood.
Hotel room in San Diego
4.94 out of 5 average rating, 17 reviews

San Diego Comicon Marriott Pulse-2 Bedroom Suite

Perfect for Comicon & Convention Center Events, the hotel is inspired by San Diego’s renowned Gaslamp Quarter, Enjoy the sleek, sophisticated setting to unwind from a day of exploration and recharge before venturing out to experience San Diego’s amazing nightlife. The suite includes 2 separate bedrooms and 2 separate living areas that are conjoined into one luxurious living space. With so much to see and do, you will need a place to come back to relax!

Hotel room in San Diego
5 out of 5 average rating, 4 reviews

Modern Gaslamp Studio | Bright Design + Walk to Ho

Stay steps from San Diego’s Gaslamp Quarter in this modern, light-filled studio built for easy city living. Perfect for up to three guests, it offers a plush queen bed, twin air mattress, and a full kitchen for casual meals in. Enjoy fast WiFi, Smart TV, and climate control in a secure building. With Petco Park, Balboa Park, and the Convention Center all nearby, you’ll be perfectly positioned to explore the best of downtown while relaxing in style.

Guest favourite
A spacious studio features large windows allowing natural light to fill the room. A sleek black sofa is positioned in the living area, complemented by a wooden dining table in the background. A small kitchenette is visible, while the bedroom is accessible through a doorway.
Hotel room in San Diego
4.77 out of 5 average rating, 31 reviews

Adventures in Downtown from Stylish Modern Studio

Explore all of San Diego’s beautiful downtown from this gorgeously restored historic hotel. Walk to everything … Gaslamp Quarter, Petco Park, Convention Center, world-class restaurants and lounges. … QUEEN Bed plus Queen Sofa Bed … 55" Samsung Smart TV - Direct TV is included … Efficiency Kitchen / Kitchenette … Air conditioning … High ceilings, ceiling fan … Fast free WIFI … Professionally cleaned & managed

Superhost
A modern guest room features two spacious beds with light-colored bedding and decorative pillows. A plush toy is positioned on one bed. The room is illuminated by bedside lamps, with sleek wooden panels providing a warm contrast to the textured wall.
Hotel room in San Diego

Hotel Z, Z 2 Queen Suite Mobility Accessible w/Tub

You’ll get your much needed pampering experience when staying in the comfy accommodations at Hotel Z. Located in San Diego’s Gaslamp Quarter, we provide you with modern rooms full of signature amenities from our Stayppineapple Hotel brand that will ensure an exciting stay. We’ll even help you with getting around the city. An amenity fee with tax ($28.09 per day) will be charged upon arrival.

Guest favourite
Hotel room in Julian
4.94 out of 5 average rating, 230 reviews

Carriage House suite #2

The mountains are calling.... Oak Hill Inn offers 3 charming rooms each with private entrance and bathroom. The perfect location with a short 5 min. walk to the heart of down town. Our Inn boasts rustic charm with modern comforts. We're family owned and operated for over 30 year and take pride in making our guest feel welcome!

A spacious room features a large bed with a textured throw blanket and natural wood furnishings. Light streams in from a nearby opening, highlighting the neutral palette. A bathroom door and a closet are visible, contributing to the convenience of the space.
Hotel room in San Clemente
4.58 out of 5 average rating, 504 reviews

The Surfbreak Hotel- 1 king bed

Each of our rooms is designed to be a relaxing oasis after a long day at the beach or out on the town. Each room is equipped with a TV, free Wifi, mini fridge, coffee maker, air conditioning, and desk for your convenience. Pets are allowed for an additional fee.

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