
Boutique hotel holiday rentals in Shinjuku
Find and book unique boutique hotel rentals on Airbnb
Top-Rated Boutique Hotels in Shinjuku
Guests agree: These boutique hotel rentals are highly rated for location, cleanliness and more.
Holiday rentals for every style
Get the amount of space that is right for you
Popular amenities for Shinjuku Boutique Hotels
Family-Friendly Boutique Hotels

2nd Floor Artistic Twin Room Inspired by Noh Dream

Shinjuku 10mins! Relaxing room max 4ppl!

New-build/family owned/large rooms/wifi/Queenbed

① Newly built in 2020, queen bed, Otsuka · Ikebukuro, smart TV [Sunshine City 3 minutes on foot]

New hotel/Compact Twin/2 people

Newly opened hotel-style t suite Subway 3 minutes

MANGADesign・2 mattress・Free simple breakfast& wifi

Newly opened hotel-style t suite Subway 3 minutes
Boutique Hotels with a patio

Asakusa Direct 2 Bathrooms Skytree Station 5 Minutes Walk 2 Suites Airport Direct Kitchen Washing Machine Amin Hotel

Shibuya direct access to Skytree station 5 min walk 3 suites 3 bathrooms Washing machine Elevator Airport direct access

4 bedrooms, 4 bathrooms, 4 washing machines, 4 kitchens, direct access to the airport, washing machine, elevator building, 5 minutes walk to Skytree station

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

Shibuya Direct 5 to Skytree Subway Hike 2 Suites 2 Bathroom Airport Direct Access to Kitchen Washing Machine Elevator

Direct access to the airport, 5 minutes walk to Skytree Station, 2 suites, 2 bathrooms, kitchen, washing machine, elevator, Amin Hotel

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest

4 bedrooms, 4 bathrooms, 3 washing machines, 4 kitchens, direct access to the airport, elevator building, 5 minutes walk to Skytree station
Other boutique hotel holiday rentals

Superior Room | Shinjuku20m|Kagurazaka

New Open!2BR 1 + Bar Kitchen!Family Room for 4-5!Asakusa Temple view!Direct access to Haneda & Narita Airport!

Modern queen suite with private bathroom - rooftop

Executive Room 56㎡|2Q+2SofaBed|20 min Shinjuku

Unique modern Japanese room, 4 subway sta. 5min!

Spacious 3F Loft with Kitchen & Uniqueness Living

4 single beds in Tokyo/2 train stations : Studio A

The Barn Tokyo - < Double room >
Quick stats about boutique hotel rentals in Shinjuku
Total rentals
50 properties
Nightly prices starting at
$86 NZD before taxes and fees
Total number of reviews
4.9K reviews
Rentals with dedicated workspaces
10 properties have a dedicated workspace
Wi-Fi availability
50 properties include access to Wi-Fi
Popular amenities
Kitchen, Wi-Fi and Pool
Destinations to explore
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- Boutique hotel rentals Tokyo Prefecture
- Boutique hotel rentals Japan
- Asakusa Sta.
- Senso-ji Temple
- Tokyo Skytree
- Akihabara Sta.
- Kinshicho Sta.
- Shibuya Station
- Ikebukuro Station
- Nippori Sta.
- Tokyo Disney Resort
- Tokyo Disneyland
- Tokyo Tower
- Tokyo Sta.
- Kamakura Yuigahama Beach
- Yoyogi Park
- Haneda Airport Terminal 1 Sta.
- Tawaramachi Station
- Tokyo Dome
- Shimo-Kitazawa Sta.
- Kamata Sta.
- Koenji Station
- Otsuka Station
- Shinagawa Station
- Shimbashi Station
- Tokyo DisneySea
- Things to do Shinjuku
- Art and culture Shinjuku
- Sightseeing Shinjuku
- Nature and outdoors Shinjuku
- Entertainment Shinjuku
- Sports activities Shinjuku
- Food and drink Shinjuku
- Tours Shinjuku
- Things to do Tokyo Prefecture
- Nature and outdoors Tokyo Prefecture
- Art and culture Tokyo Prefecture
- Sightseeing Tokyo Prefecture
- Tours Tokyo Prefecture
- Food and drink Tokyo Prefecture
- Entertainment Tokyo Prefecture
- Sports activities Tokyo Prefecture
- Wellness Tokyo Prefecture
- Things to do Japan
- Nature and outdoors Japan
- Wellness Japan
- Tours Japan
- Sightseeing Japan
- Sports activities Japan
- Entertainment Japan
- Food and drink Japan
- Art and culture Japan