
Boutique hotel holiday rentals in Shinjuku
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Top-Rated Boutique Hotels in Shinjuku
Guests agree: These boutique hotel rentals are highly rated for location, cleanliness and more.
Holiday rentals for every style
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Popular amenities for Shinjuku Boutique Hotels
Family-Friendly Boutique Hotels

2nd Floor Artistic Twin Room Inspired by Noh Dream

Modern queen suite with private bathroom - rooftop

Shinjuku 10mins! Relaxing room max 4ppl!

Newly opened hotel-style t suite Subway 3 minutes

MANGADesign・2 mattress・Free simple breakfast& wifi

Newly opened hotel-style t suite Subway 3 minutes

Studio apt 6p|Shibuya Sta 8min walk|Wifi|Kitchen

Ground Floor Zen Room with – Artistic Tokyo Stay
Boutique Hotels with a patio

Asakusa Direct 2 Bathrooms Skytree Station 5 Minutes Walk 2 Suites Airport Direct Kitchen Washing Machine Amin Hotel

Shibuya direct access to Skytree station 5 min walk 3 suites 3 bathrooms Washing machine Elevator Airport direct access

4 bedrooms, 4 bathrooms, 4 washing machines, 4 kitchens, direct access to the airport, washing machine, elevator building, 5 minutes walk to Skytree station

3 sets of bathrooms MAX14 people Skytree station 5 minutes 3 suite airport direct access to kitchen washing machine elevator

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

Shibuya Direct 5 to Skytree Subway Hike 2 Suites 2 Bathroom Airport Direct Access to Kitchen Washing Machine Elevator

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest

4 bedrooms, 4 bathrooms, 3 washing machines, 4 kitchens, direct access to the airport, elevator building, 5 minutes walk to Skytree station
Other boutique hotel holiday rentals

condominium with everything you need for dailylife

Superior Room | Shinjuku20m|Kagurazaka

New Open! 2 bedrooms 1 living room + bar kitchen! Family room for 4-5 people! Sensoji Temple View! Night view of the Skytree from the balcony! Direct access to Haneda & Narita Airport!

Executive Room 56㎡|2Q+2SofaBed|20 min Shinjuku

Spacious 3F Loft with Kitchen & Uniqueness Living

4 single beds in Tokyo/2 train stations : Studio A

The Barn Tokyo - < Double room >

New-build/family owned/large rooms/wifi/Queenbed
Quick stats about boutique hotel rentals in Shinjuku
Total rentals
50 properties
Nightly prices starting at
$85 NZD before taxes and fees
Total number of reviews
4.9K reviews
Rentals with dedicated workspaces
10 properties have a dedicated workspace
Wi-Fi availability
50 properties include access to Wi-Fi
Popular amenities
Kitchen, Wi-Fi and Pool
Destinations to explore
- Rentals with a patio Shinjuku
- Condo rentals Shinjuku
- Serviced apartment rentals Shinjuku
- Rentals with a fireplace Shinjuku
- Pet-friendly rentals Shinjuku
- Hotel rentals Shinjuku
- Family-friendly rentals Shinjuku
- House rentals Shinjuku
- Waterfront rentals Shinjuku
- Rentals with a hot tub Shinjuku
- Villa rentals Shinjuku
- Rentals with a washing machine and dryer Shinjuku
- Loft rentals Shinjuku
- Smoking-friendly rentals Shinjuku
- Apartment rentals Shinjuku
- Rentals with outdoor seating Shinjuku
- Rentals with breakfast Shinjuku
- Rentals with a home theatre Shinjuku
- Aparthotel rentals Shinjuku
- Fitness-friendly rentals Shinjuku
- Hostel rentals Shinjuku
- Boutique hotel rentals Tokyo Prefecture
- Boutique hotel rentals Japan
- Asakusa Sta.
- Senso-ji Temple
- Tokyo Skytree
- Akihabara Sta.
- Kinshicho Sta.
- Shibuya Station
- Ikebukuro Station
- Nippori Sta.
- Tokyo Disney Resort
- Tokyo Disneyland
- Tokyo Tower
- Tokyo Sta.
- Kamakura Yuigahama Beach
- Yoyogi Park
- Haneda Airport Terminal 1 Sta.
- Tawaramachi Station
- Tokyo Dome
- Shimo-Kitazawa Sta.
- Kamata Sta.
- Koenji Station
- Otsuka Station
- Shinagawa Station
- Shimbashi Station
- Tokyo DisneySea
- Things to do Shinjuku
- Nature and outdoors Shinjuku
- Sightseeing Shinjuku
- Entertainment Shinjuku
- Food and drink Shinjuku
- Sports activities Shinjuku
- Tours Shinjuku
- Art and culture Shinjuku
- Things to do Tokyo Prefecture
- Art and culture Tokyo Prefecture
- Sightseeing Tokyo Prefecture
- Tours Tokyo Prefecture
- Nature and outdoors Tokyo Prefecture
- Entertainment Tokyo Prefecture
- Wellness Tokyo Prefecture
- Food and drink Tokyo Prefecture
- Sports activities Tokyo Prefecture
- Things to do Japan
- Wellness Japan
- Food and drink Japan
- Tours Japan
- Sightseeing Japan
- Nature and outdoors Japan
- Entertainment Japan
- Sports activities Japan
- Art and culture Japan