
Boutique hotels in Wisconsin River
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Top-rated boutique hotels in Wisconsin River
Guests agree: These boutique hotels are highly rated for location, cleanliness and more.

Walking Iron Sanctuary-Iron Amethyst Inn
Enter the Doctor’s Study through a re-created turn-of-the-century study – medical journals and top hat neatly hung up, a crank wall phone and calendar look as if the doctor just returned from a house call. Step under the arch and into the bedroom with queen-size brass bed with cast cherubs, past the remote-controlled fireplace, and into your cozy private bath. This bath has the best of both worlds with it’s large two-person shower featuring separate controls, body sprays, and the hand-made English tile version of “A Coign of Vantage” by Lawrence Alma-Tadema make this the ultimate showering experience! Step around the corner to enjoy the large double whirlpool bath, Doc Kester’s remedy to all that ails you. Located on the first floor.

ALL 5 BEDROOMS !! - Burlington Hotel & Bar
The Burlington Hotel & Bar was built with 12 sleeping rooms for railroad workers in 1891. Located in Alma along the Mississippi River and still along active railroad tracks, it was added to the National Register of Historical Places in 1982. The hotel now features 5 bedrooms for up to 12 guests, a bar & a shop called 'Queen Bee Alma' offering crochet & craft classes. Location: 1/2 mile from the marina/beach, a few doors down from Kwik Trip, and a short walk to the bars & shops, downtown Alma.

302 Edward's Attic Suite - Queen Bed
Edward's attic suite pays tribute to early local families who quietly shaped the town's development through business, farming, and civic leadership. Tucked into the upper level of the home, this suite embraces its architectural charm with angled ceilings, cozy corners, and warm textures that feel intimate yet elevated. Queen bed Full kitchen Comfy living room Original flooring Boutique finishes Perfect for quests who value privacy, charm, and the feeling of having discovered something special.

Braywood Inn - Casa Suite (2 Bedroom)
Our largest suite is on the 2nd floor, sleeps 6 and is perfect for families/friends traveling together. The Master has a king size four poster bed. The living room has a work station, sofa with chaise, and a flat screen television with a DVD player. The second bedroom offers two full size beds. A flat screen television, iPod alarm clock, robes, and closet space are also amenities. The bathroom, which offers your own laundry facilities, has a bathtub, tiled steam like shower and double vanity.

American House 1854- Stagecoach Stop Suite
Take in the beauty of the Mississippi River at this unique and tranquil getaway. The American House Inn is the oldest standing building in McGregor, IA. Built in 1854, this building is on the National Registry of Historic Places and takes you back to the late 1800s but with modern amenities. Located just across the street from Big Bouys Marina, Kwik Star and a block from the Sadie’s Sweet Ice Cream shop! You don’t want to miss enjoying all of the history and the beauty of this vintage gem!

b3 Room1: Awareness King Suite
Where creativity meets comfort, where art inspires at every corner, and every detail is designed to bring you joy. Welcome to b3experience, a one-of-a-kind art-inspired micro-hotel in the heart of Sparta, Wisconsin. Whether you seek adventure or tranquility, b3experience offers unforgettable memories. Rent a single suite for a business trip or romantic weekend, or bring your friends and rent multiple of our 4 private suites, each with their own private full bathroom, for a unique getaway!

Elegant Gessel -1BR/1BAw/Jacuzzi @ The Tritsch House
Enjoy the most spacious and elegant room in this fully remodeled 1902 Queen Anne. This has long been the favorite room at the Tritsch House - the bathroom is just as big as the bedroom! Guests also have access to all of the main level common areas including the billiard parlor, living and dining rooms, and any one of the three porches. Two of these porches have Mississippi River views. Guests also love hanging out in the newly remodeled kitchen. Sorry, but microwave only cooking.

Private room with backyard view - 2 beds
Our place is close to many touristic attractions; we are on the Frank Lloyd Wright TRAIL, Taliesin, WI River, restaurants and dining, family-friendly activities, parks, theater, shopping, downtown within walking distance. You’ll love our place because is well known for having an architectural organic design, the ambiance, the history, we can offer a different experience, dining table inside, the outdoors space. My place is good for couples, solo adventurers and business travelers.

Suite in Hotel
The GrandStay Hotel & Suites La Crosse is located in beautiful downtown, steps from the Mississippi River and International Friendship Gardens. Our One Bedroom Suite offers a queen size bed in a separate bedroom, full kitchen with place settings for four and table with two chairs . In the living area of the suite guests can relax on a full size sofa sleeper and club chair with ottoman. We offer complimentary Grand Start Breakfast, free internet and free parking.

Cozy Boutique Motel Room - Walkable + Easy Parking
A quaint, thoughtfully updated motel room in the heart of Thorp—perfect for a comfortable overnight stay or a few easy days in town. - Keyless entry for easy check-in - Parking spot directly outside your door - Designated spot to work Located in a walkable small-town setting - just a short walk from a local coffee shop, bakery, thrift store, bars, restaurant, and grocery stores. Traveling with a little one? A pack and play is available upon request.

Bridge Inn Rm106 Pet Friendly 1 King w RiverView
Every Room with a Beautiful View of The Wisconsin River / Snowmobile Trail Access / UTV/ATV Trail Access / Boat Launch / Walking Distance to Restaurant, bar & Shopping / Kwahamot Waterski Shows from Memorial Day to Labor Day / Plenty of Parking / Open Year-Round / Family Owned & Operated. --- Cable TV / Wi-Fi / In-Room Heat & Air-Con, Fridge, and Microwave Oven --- Virtual Reception / Smart Lock / Self-Check In --- Pets are Allowed Upon Request

Governor's Mansion Inn - premium queen
We have 5 elegant guest rooms each with private bath in a downtown boutique hotel. The state housed 17 of Wisconsin's governors here while in office. We are located in the Mansion Hill district on the shore of Lake Mendota. We are close to the State Capitol, State Street shopping, restaurants and the UW Madison campus. Free onsite parking. Discounts are available at Governors Mansion Inn Madison.
Popular amenities for Wisconsin River boutique hotels
Family-friendly boutique hotels

Houston Room @ Root River Inn Downtown Resort

Whalan Room @ Root River Inn Resort

The Rushford Inn - Conjoined Double Queen

Lanesboro Suite @ Root River Inn Downtown Resort

Stone Mill Hotel & Suites - Forest Whirlpool Suite

Rushford Suite @ Root River Inn Resort

The Rushford Inn - Double Queen

Chosen Valley Suite Root River Inn Downtown Resort
Boutique hotels with a patio

202 Elvehjem Suite - King Bed

Spacious King bedroom with well-appointed bathroom

201 Lake Waubesa Suite - Double Queen

301 Evanson's Attic Loft - Queen Bed

Studio King with Kitchenette-44° North

Cambridge Inn on Main - Lake Ripley Rm

203 Larson's Garden View Suite - King Bed

Double Queen with Kitchenette, Balcony-44° North
Other boutique hotel holiday rentals

The Sawmill Inn - Double Queen

Studio Suite in a Hotel

The Rushford Inn - King Suite

Braywood Inn - Belle Suite

Governor's Mansion Inn - Garden Studio

Bridge Inn Suite201 Kitchen HotTub1King 2 Sofabeds

Bridge Inn 1st Floor 2 Queens Walkout w River View

The Nordic Retreat - Iron Amethyst Inn
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