
Boutique hotel holiday rentals in Shinjuku
Find and book unique boutique hotel rentals on Airbnb
Top-Rated Boutique Hotels in Shinjuku
Guests agree: These boutique hotel rentals are highly rated for location, cleanliness and more.

90sqm. Tatami, traditional Japanese style room
Our room is featured real Japanese style. Many Japanese also love this simple and traditional space. It'll be chance to know real Japan! 3 subway 5 mins walk. Tukiji 5 mins by subway, Ginza, Akiba, Asakusa, 15mins by subway without transfer. Here is popular for large family trip. We have 3 separate room with bed and FUTON. Especially family with kids can choose many baby equipment. From NARITA Airport 55 min, HANEDA 25min. We can store your luggage before check-in or after check-out for free!

The Hideout Tokyo -(Double Room)-
We're Central Tokyo's family run hotel for those who want to travel in style. Our petite 5-room hotel offers reasonably priced compact yet cozy accommodation with many of the features you'd expect from a larger,branded property. Private shower&sink. We're located walking distance from many of Tokyo's finest sightseeing spots and just a 4/2 minute walk from JR Yamanote line,Subway Hibiya line connecting you quickly to the rest of the city. ※We’re legal hotel with hotel permit from the government

Standard Room|Accessible|20mShinjuku|Kagurazaka
Barrier-free room ideal for families or small groups. The ground-floor 30 m² twin sleeps up to 4 with two Simmons double beds. In-room: free Wi-Fi, A/C, mini-fridge, air-purifier, safe, TV and hair-dryer. Bathroom stocked with shampoo, conditioner, body & hand soap, towels, gowns, slippers, toothbrush set, cotton kit, razor, sponge and brush. No on-site parking or washer—please use nearby coin lots and laundromats. Fee-based rentals (limited): hair iron, board games, projector, Fire TV Stick.

④ Newly built in 2020/Queen bed/Modern bathroom/Rain shower Sunshine City 3 minutes
Newly built with travelers in mind. The rooms are spacious with Queen size beds (practically unheard-of in Japan). Smart TV, Wi-Fi, tea and coffee. The bathrooms are fashionable, with large walk in rain showers. LED mirrors to get you ready for whatever lighting you will encounter. Rooms have a bar fridge, microwave and kettle for you to store and prepare ready-made meals and drinks. All rooms come equipped with Air-conditioning, ceiling fans and black-out curtains. Ample storage space also!

全新開幕!2房1廳+吧台廚房!4-5人家庭房!浅草寺景觀!直通羽田&成田機場!
the Moto Hotel Asakusa is a new hotel opened in June 2021. The nearest station is Ginza sen-Asakusa station 7-8mins by walking. JR Ueno station is walking by 30 mins or 3 steps by Ginza Line(from Asakusa station to Ueno station)is 6 mins. Askusa is famous for the Sensō-ji and it's only 1min from us. The development of Asakusa as an entertainment district during the Edo period so there's many delicious & traditional food & store surround us. The Kappabashi Dougu street is 7mins by foot too.

Nippori train 2min 6Bed 3WC 2Bath Ueno Akihabara
「MoRi House IN 西日暮里」は 2019年新築の三階建一棟ビル3LDK97㎡ 寝室3室・トイレ3室・シャワー1室・バスタブ1室・キッチン1室 # 3寝室 -寝室A( 1階、シングルベッド2床個室) -寝室B ( 3階、ダブルベッド2床備えた個室) -寝室C (3階、ダブルベット2床備えた個室) 家族、親友同士で自宅感覚で寛げる快適空間を提供致します。 普通のホテルと違い、システム対面キッチンが備え付けており、就寝は一階と三階別々の部屋で、皆んなの集まりは二階のリビングで、キッチン設備を使ってお好きの料理も作って楽しめる事が可能です。 旅先でも自宅にいるような「家族団欒」気分を楽しむ事が出来ます。 当施設までのアクセスはとても便利です。 成田空港から新三河島駅までは京成線一本で着きます。 新三河島駅からは歩いて3分の距離に位置しています。 その他最寄り駅までの徒歩所要時間 JP「西日暮里駅」10分、東京メトロ千代田「西日暮里駅」8分 バス停留所も近くにあります。 届出・登録番号 旅館業法の許可番号 | 東京都保健所 | 30荒保環き(三)第25号

A perfect condominium for business or leisure
・“Only 13 minutes from Shibuya” Convenient access to central Tokyo, where you can relax in a quiet living environment after enjoying sightseeing and shopping. ・Flexible accommodation styles allow you to flexibly adjust the length of stay and type of room, from sightseeing to work, short-term stays to long-term stays. ・Many residents live in share houses who are fluent in English, creating an international and diverse community. You can enjoy new friends and international exchange.

12-min walk to Sensoji - Boutique Hotel
一遊ホテル浅草 is a boutique hotel located in Taito City, offering excellent access to major transportation. Nestled in a quiet residential neighborhood, yet close to Tokyo’s most popular sightseeing spots, this is an ideal base for tourists, couples, and business travelers – only a 12-minute walk from the famous Sensoji Temple, where you can enjoy the blend of traditional culture and modern Tokyo vibes. Plenty of dining options nearby, from traditional Japanese food to stylish cafes.

4 single beds in Tokyo/2 train stations : Studio A
A quiet, modern & unique structured room with 4single beds & a private bathroom. 2train stations in 10min. walk, easy access to Shinjuku, Shibuya, Akihabara, Asakusa, Tokyo Dome and Disney Resort! Not 24H open reception, MUST arrive by 11PM. After 11PM check in is not available. *No early check in (from 3PM) *No late check in (by 11PM) *No late check out (by 10AM). *No discount. *Max : 4people. *For the environment room cleaning will be done once in 5nights.

Stay in Art 1 min from Koenji Sta./BnA Koenji 2F
BnA Home Koenji is an independent art hotel created by the Bed & Art Project (BnA)—an ambitious and experimental hospitality concept that blends art, community, and immersive travel. At BnA, guests don't just stay at a hotel—they stay inside a work of art. Each room is a one-of-a-kind collaboration, designed and built by local artists, architects, textile designers, and carpenters to create a deeply personal and unforgettable experience.

302 Room Tokyo JR Yamanote Line and Namboku Line Komagome Station 4 min walk
The apartment is located at Komagome Station on the Yamanote Line. Located in a traditional shopping street, you can feel the real Japanese culture. The train line goes directly to all the popular attractions in Tokyo. Trust me, this neighborhood will give you a real sense of Japanese culture. There are many restaurants around the apartment where you can taste real Japanese food. Life is convenient and shopping is convenient.

TheMillennialsShibuya/Mixed Smart Pod/1 Guest
Welcome to The Millennials Shibuya, a futuristic accommodation facility equipped with the world's first IOT-equipped "Smart Pod" and a lounge with a coworking space. In addition, there are plenty of common spaces, including a 24-hour shared lounge, a 24-hour self-kitchen, a 24-hour working lounge, a shared shower and toilet, and a shared laundry. 20% of the total area of the hotel is allocated to the common area.
Popular amenities for Shinjuku Boutique Hotels
Family-Friendly Boutique Hotels

No Service Hotel 301 / 7 min to Asakusa

Shinjuku 10mins! Relaxing room max 4ppl!

About 5 minutes on foot from Azabu Juban Station/double room "Breakfast included"

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

4F Shin-Okachimachi: A charming city where you can enjoy both the city center and downtown. Asakusa Ueno: The starting point of the Asakusa downtown area. Former Asakusa

Contemporary studio apartment with stylish patio

New hotel/Compact Twin/2 people

Newly opened hotel-style t suite Subway 3 minutes
Boutique Hotels with a patio

Asakusa Direct 2 Bathrooms Skytree Station 5 Minutes Walk 2 Suites Airport Direct Kitchen Washing Machine Amin Hotel

Shibuya direct access to Skytree station 5 min walk 3 suites 3 bathrooms Washing machine Elevator Airport direct access

4 bedrooms, 4 bathrooms, 4 washing machines, 4 kitchens, direct access to the airport, washing machine, elevator building, 5 minutes walk to Skytree station

3 sets of bathrooms MAX14 people Skytree station 5 minutes 3 suite airport direct access to kitchen washing machine elevator

5 min walk to Skytree Station, direct access to airport and Disney, kitchen, washing machine, wifi, elevator, Amin Hotel

Shibuya Direct 5 to Skytree Subway Hike 2 Suites 2 Bathroom Airport Direct Access to Kitchen Washing Machine Elevator

Direct access to the airport, 5 minutes walk to Skytree Station, 2 suites, 2 bathrooms, kitchen, washing machine, elevator, Amin Hotel

TheMillennialsShibuya/Smart Pod Girls Only/1 Guest
Other boutique hotel holiday rentals

PEGASUS HOTEL (Japanese room) 502

2nd Floor Artistic Twin Room Inspired by Noh Dream

Cozy Loft Room with Noh Art Vibes – Near JR Otsuka

4 single beds in Tokyo/2 train stations: Studio B

全新開幕!2房1廳+吧台廚房!4-5人家庭房!浅草寺景觀!陽台晴空塔夜景!直通羽田&成田機場!

PEGASUS HOTEL (Western Style room) 301

Modern queen suite with private bathroom - rooftop

Room 101, 3 mins walk from Asakusabashi Station, Asakusa, Akihabara, Ueno neighborhood, kitchen with cooking utensils, washing machine, direct access to Haneda and Narita Airport
Quick stats about boutique hotel rentals in Shinjuku
Total rentals
30 properties
Nightly prices starting at
$87 NZD before taxes and fees
Total number of reviews
1.8K reviews
Wi-Fi availability
30 properties include access to Wi-Fi
Popular amenities
Kitchen, Wi-Fi and Pool
Local attractions
Shinjuku Station, Shin-Okubo Station and Lumine the Yoshimoto
Destinations to explore
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- Asakusa Sta.
- Oshiage Sta.
- Senso-ji Temple
- Tokyo Skytree
- Akihabara Sta.
- Shibuya Station
- Tokyo Sta.
- Kinshicho Sta.
- Tokyo Disney Resort
- Ikebukuro Station
- Tokyo Disneyland
- Nippori Sta.
- Ueno Sta.
- Shimo-Kitazawa Sta.
- Tokyo Tower
- Haneda Airport Terminal 1 Sta.
- Yoyogi Park
- Koenji Station
- Kamakura Yuigahama Beach
- Tokyo Dome
- Otsuka Station
- Shinagawa Station
- Kamata Sta.
- Makuhari Station
- Things to do Shinjuku
- Things to do Shinjuku
- Art and culture Shinjuku
- Sightseeing Shinjuku
- Tours Shinjuku
- Sports activities Shinjuku
- Food and drink Shinjuku
- Entertainment Shinjuku
- Things to do Tokyo Prefecture
- Sightseeing Tokyo Prefecture
- Nature and outdoors Tokyo Prefecture
- Art and culture Tokyo Prefecture
- Food and drink Tokyo Prefecture
- Wellness Tokyo Prefecture
- Tours Tokyo Prefecture
- Sports activities Tokyo Prefecture
- Entertainment Tokyo Prefecture
- Things to do Japan
- Food and drink Japan
- Sightseeing Japan
- Wellness Japan
- Tours Japan
- Sports activities Japan
- Nature and outdoors Japan
- Entertainment Japan
- Art and culture Japan